Before doing any type of iOS 5.0 development using Xcode 4.2, Xcode has provided a \"MainWindow.xib\" in templates. After downloading and playing with Xcode 4.2 with iOS 5.
It is has always been an option not to use MainWindow.xib. The UIWindow could be loaded programmatically by the doing the following:
1) Making sure that the call to UIApplicationMain in main.m looks like this:
UIApplicationMain(argc, argv, nil, @"MyAppDelegateClassName");
rather than this:
UIApplicationMain(argc, argv, nil, nil);
2) Making sure that Info.plist does not have a value of "MainWindow.xib" as the main nib file.
3) Loading the UIWindow programmatically in the app delegate.
So, no, you don't have to use MainWindow.xib and, actually, you never have. You could always do things programmatically.
It is a good question why Apple made this change in the default Xcode settings, and I don't know the answer. But it may have to with performance or the transition to ARC or small application file sizes or something else altogether.