Assuming you're going to be going on, it's handy to keep a little library file of helper functions. 2 of those functions should be endian swaps for 4 byte values, and 2 byte values. For some solid examples (including code) check out this article.
Once you've got your swap functions, any time you read in a value in the wrong endian, call the appropriate swap function. Sometimes a stumbling point for people here is that single byte values do not need to be endian swapped, so if you're reading in something like a character stream that represents a string of letters from a file, that should be good to go. It's only when you're reading in a value this is multiple bytes (like an integer value) that you have to swap them.
