The short version of my issue at hand,
The following solution was implemented because recently our IDE stopped compiling and building [refresh or clean] on the standard Eclipse IDE for Java Developers version. We kept receiving the error "Your project contains error(s), please fix it before running it." We reviewed all errors, cleaned over and over, rebuilt and even created a new workspace and imported the files however nothing worked. Our product manager Johnpaul, found the error with in the compiled build path and even though it was a manual fix it would come back on the next refresh or rebuild so he recommended we back-up our work-space and do a complete re-install of the developers environment.
We made the switch as a recommendation we found from: http://knol.google.com/k/fred-grott/which-eclipse-package-for-android/166jfml0mowlh/18#report-comment-166jfml0mowlh.7wc65w
We now use the Eclipse IDE [Indigo]for Java and Report Developers Windows 64 Bit without a problem.
After the IDE broke we downloaded:
We then:
Next we:
Windows 64 Bit
We kept all of the default preferences and now everything is working perfectly again. Actually better as the rewrite also solved a few problems with our app not working on some devices. No idea as to why but we aren't complaining. Hope this helps as it is not a true install however a reinstall for Fall 2011 in a Windows 7 64 bit environment.