I use the PyCharm community edition and also ipython. PyCharm automatically recognizes ipython and sets it as the default console (PyCharm webhelp link), so when in debuggin
Go in File --> Default Settings, click console , Uncheck Use IPython, if available
then go in File --> Settings, uncheck Use IPython, if available
Default Settings and Settings are two different options in File menu so make sure to follow both
i am using PyCharm version 3.4 and after doing both the above processes i do not get IPython Console.