I am having an issue getting my Pycharm environment to match up with the environment that I have on the command line. I recently removed python and reinstalled it via home
If you are using PyCharm version 2016.3 and have noticed that your PyCharm Terminal is no longer providing the same default environment as your MacOs Terminal environment, it is a bug that should be fixed in 2016.3.1 - whenever it releases. In the mean time, the following is a workaround that should 'default' all of your PyCharm projects back a more more MacOS-Terminal like PyCharm-Terminal:
Create a ~/.bashrc file with the following contents:
source /etc/bashrc
source /etc/bashrc_Apple_Terminal
source ~/.bash_profile
This should setup your PyCharm Terminal (interactive bash session) and make it similar to the MacOS Terminal (login bash session). Once JetBrains patches and releases 2016.3.1, I recommend deleting this ~/.bashrc file. Hopefully this will get us all back to normal.