Android Studio 0.4.2 was working fine and today I opened it and almost everything was red and the auto-completion had stopped working. I look at the imports and AS seems to
You've already gone down the list of most things that would be helpful, but you could try:
By the way, the error messages you see in the Project Structure dialog are bogus for the most part.
UPDATE:
Android Studio 0.4.3 is available in the canary update channel, and should hopefully solve most of these issues. There may be some lingering problems; if you see them in 0.4.3, let us know, and try to give us a reliable set of steps to reproduce so we can ensure we've taken care of all code paths.