I came across this post, which reports the following interview question:
Given two arrays of numbers, find if each of the two arrays have the same s
The usual assumption for these kinds of problems is Theta(log n)-bit words, because that's the minimum needed to index the input.
sshannin's polynomial-evaluation answer works fine over finite fields, which sidesteps the difficulties with limited-precision registers. All we need are a prime of the appropriate (easy to find under the same assumptions that support a lot of public-key crypto) or an irreducible polynomial in (Z/2)[x] of the appropriate degree (difficulty here is multiplying polynomials quickly, but I think the algorithm would be o(n log n)).
If we can modify the input with the restriction that it must maintain the same set, then it's not too hard to find space for radix sort. Select the (n/log n)th element from each array and partition both arrays. Sort the size-(n/log n) pieces and compare them. Now use radix sort on the size-(n - n/log n) pieces. From the previously processed elements, we can obtain n/log n bits, where bit i is on if a[2*i] > a[2*i + 1] and off if a[2*i] < a[2*i + 1]. This is sufficient to support a radix sort with n/(log n)^2 buckets.