Automatic full-code obfuscation is so far only available in the Closure Compiler's Advanced mode.
Code compiled with Closure Advanced mode is almost impossible to reverse-engineer, even passing through a beautifier, as the entire code base (includinhg the library) is obfuscated. It is also 25% small on average.
JavaScript code that is merely minified (YUI Compressor, Uglify etc.) is easy to reverse-engineer after passing through a beautifier.
If you use a JavaScript library, consider Dojo Toolkit which is compatible (after minor modifications) with the Closure Compiler's Advanced mode compilation.
http://dojo-toolkit.33424.n3.nabble.com/file/n2636749/Using_the_Dojo_Toolkit_with_the_Closure_Compiler.pdf?by-user=t
