I am currently using TortoiseSVN to manage a couple of the projects that I have on the go at the moment. When I first moved everything into source control I wasn\'t really
I would store them in the same repository. It's kind of neater. Plus why would it matter for continuous integration and such - you can always pull a specific folder from the repository.
It's also easier to administer - accounts to one repository, access logs of one repository etc.