Surprised a multiline re.sub has not been suggested (Oh, because you've already split your string... But why?):
>>> import re
>>> a = "Foo\n \nBar\nBaz\n\n Garply\n \n"
>>> print a
Foo
Bar
Baz
Garply
>>> print(re.sub(r'\n\s*\n','\n',a,re.MULTILINE))
Foo
Bar
Baz
Garply
>>>