I have a project in Pycharm organized as follows:
-- Sources
|--__init__.py
|--Calculators
|--__init__.py
|--Filters.py
|--Controllers
I have solved this problem in my pycharm in a bit different way.
Go to settings -> Project Interpreter and then click on the base package there.
You will see a page like this
After that when your package is installed then you should see the package is colored blue rather than white.
And the unresolved reference is also gone too.