When I tried to run the R console in Eclipse, I got this error:
....Please make sure that R package \'rj\' (1.1 or compatible) is installed...
or just set the library in R?
I just ran this command in R:
Sys.setenv(JAVA_HOME='/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server')
(replace "/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server" with your Java library path which can be found running "sudo R CMD javareconf")
Might not be the most elegant solution - but it worked for me!