I have a Java app which needs to perform partial least squares regression. It would appear there are no Java implementations of PLSR out there. Weka might have had something
This seems to be an old question. However Rserve and rJava are two good packages to integrate R with Java. Following blogs explain usage of both these libraries.
For rJava: http://www.codophile.com/how-to-integrate-r-with-java-using-rjava/
For Rserve: http://www.codophile.com/how-to-integrate-r-with-java-using-rserve/
I hope this will help.