I know Git stores information of when files get deleted and I am able to check individual commits to see which files have been removed, but is there a command that would gen
This will get you a list of all files that were deleted in all branches, sorted by their path:
git log --diff-filter=D --summary | grep "delete mode 100" | cut -c 21- | sort > deleted.txt
Works in msysgit (2.6.1.windows.1). Note we need "delete mode 100" as git files may have been commited as mode 100644 or 100755.