After peeking around the internet it looks like it is possible to interop between C# and Matlab. I am wondering if anyone has had success with it and what they did to do so.
I'm not sure how much this applies to you but try looking into matlab executables or MEX Basically, it's really easy to write a program in C or FORTRAN, include a few libraries and functions, and then you can use you C or FORTRAN function in matlab