I have a text file:
1 Q0 1657 1 19.6117 Exp
1 Q0 1410 2 18.8302 Exp
2 Q0 3078 1 18.6695 Exp
2 Q0 2434 2 14.0508 Exp
2 Q0 3129 3 13.5495 Exp
If you are using structured data, this has the added benefit of not invoking an extra shell process to run tr and/or cut or something. ...
(Of course, you will want to guard against bad inputs with conditionals and sane alternatives.)
...
while read line ;
do
lineCols=( $line ) ;
echo "${lineCols[0]}"
echo "${lineCols[1]}"
done < $myFQFileToRead ;
...