Convert NOT IN queries to LEFT OUTER JOINS if possible. For example if you want to find all rows in Table1 that are unused by a foreign key in Table2 you could do this:
SELECT *
FROM Table1
WHERE Table1.ID NOT IN (
SELECT Table1ID
FROM Table2)
But you get much better performance with this:
SELECT Table1.*
FROM Table1
LEFT OUTER JOIN Table2 ON Table1.ID = Table2.Table1ID
WHERE Table2.ID is null