I\'ve a Windows Phone 8.0 app on the Windows Phone Store, and I want to update my app to Windows Phone store API (and not Windows Phone Silverlight 8.1) to prepare Windows 8
TL;DR; - It preserves data on Isolated Storage when updating from WP8.0 to WP8.1 Runtime.
Because the provided link to MSDN says only about Silverlight apps, and it's not clear (if I hadn't missed something) what would happen in case: I've old WP8.0 Silverlight App and now I decided to upgrade it to WP8.1 Runtime - I've performed a simple test:
So it turns out that LPains answer is correct (+1).