I have a data frame e.g.:
sub day
1 1
1 2
1 3
1 4
2 1
2 2
2 3
2 4
3 1
3 2
3 3
3 4
DF[ ! ( ( DF$sub ==1 & DF$day==2) | ( DF$sub ==3 & DF$day==4) ) , ] # note the ! (negation)
Or if sub is a factor as suggested by your use of quotes:
DF[ ! paste(sub,day,sep="_") %in% c("1_2", "3_4"), ]
Could also use subset:
subset(DF, ! paste(sub,day,sep="_") %in% c("1_2", "3_4") )
(And I endorse the use of which
in Dirk's answer when using "[" even though some claim it is not needed.)