In Linux world, to get nano seconds precision timer/clockticks one can use :
#include
int foo()
RTDSC is not synchronized across CPUs. Thus, you cannot rely on it in a multi-processor systems. The only workaround I can think of for Linux would be to actually restricting the process to run on a single CPU by settings its affinity. This can be done externally using using taskset utility or "internally" using sched_setaffinity or pthread_setaffinity_np functions.