What does “S3 methods” mean in R?

Question

Since I am fairly new to R, I do not know what the S3 methods and objects are. I found that there are S3 and S4 object systems, and some recommend to use S3 over S4 if possi

Answer 1

From http://adv-r.had.co.nz/OO-essentials.html:

R’s three OO systems differ in how classes and methods are defined:

• S3 implements a style of OO programming called generic-function OO. This is different from most programming languages, like Java, C++ and C#, which implement message-passing OO. With message-passing, messages (methods) are sent to objects and the object determines which function to call. Typically, this object has a special appearance in the method call, usually appearing before the name of the method/message: e.g. canvas.drawRect("blue"). S3 is different. While computations are still carried out via methods, a special type of function called a generic function decides which method to call, e.g., drawRect(canvas, "blue"). S3 is a very casual system. It has no formal definition of classes.

• S4 works similarly to S3, but is more formal. There are two major differences to S3. S4 has formal class definitions, which describe the representation and inheritance for each class, and has special helper functions for defining generics and methods. S4 also has multiple dispatch, which means that generic functions can pick methods based on the class of any number of arguments, not just one.

• Reference classes, called RC for short, are quite different from S3 and S4. RC implements message-passing OO, so methods belong to classes, not functions. $ is used to separate objects and methods, so method calls look like canvas$drawRect("blue"). RC objects are also mutable: they don’t use R’s usual copy-on-modify semantics, but are modified in place. This makes them harder to reason about, but allows them to solve problems that are difficult to solve with S3 or S4.

There’s also one other system that’s not quite OO, but it’s important to mention here:

• base types, the internal C-level types that underlie the other OO systems. Base types are mostly manipulated using C code, but they’re important to know about because they provide the building blocks for the other OO systems.