I need to perform some operations on scope and the template. It seems that I can do that in either the link function or the controller function (si
The difference between link and controller comes into play when you want to nest directives in your DOM and expose API functions from the parent directive to the nested ones.
From the docs:
Best Practice: use controller when you want to expose an API to other directives. Otherwise use link.
Say you want to have two directives my-form and my-text-input and you want my-text-input directive to appear only inside my-form and nowhere else.
In that case, you will say while defining the directive my-text-input that it requires a controller from the parent DOM element using the require argument, like this: require: '^myForm'. Now the controller from the parent element will be injected into the link function as the fourth argument, following $scope, element, attributes. You can call functions on that controller and communicate with the parent directive.
Moreover, if such a controller is not found, an error will be raised.
There is no real need to use the link function if one is defining the controller since the $scope is available on the controller. Moreover, while defining both link and controller, one does need to be careful about the order of invocation of the two (controller is executed before).
However, in keeping with the Angular way, most DOM manipulation and 2-way binding using $watchers is usually done in the link function while the API for children and $scope manipulation is done in the controller. This is not a hard and fast rule, but doing so will make the code more modular and help in separation of concerns (controller will maintain the directive state and link function will maintain the DOM + outside bindings).