I downloaded the Android PDF Viewer source code and am trying to compile it in Eclipse. Instead of messing with Cygwin and recompiling the native C libraries, my friend said
As mentioned another Stack Overflow thread about this topic switching off "Automatically refresh Resources and Assets folder on build" and "Force error when external jars contain native libraries" under Window/Preferences/Android/Build helps. At least it helped in my case!
And don't forget to put the so-file in 'lib s/armeabi' to have it availible at runtime.
Hope this helped others, also if it was too late for Li_W.