I have an application - more like a utility - that sits in a corner and updates two different databases periodically.
It is a little standalone app that has been bu
When you say "two different databases", do you mean different database servers, or two different schemas within the same DB server?
If the former, then if you want full transactionality, then you need the XA transaction API, which provides full two-phase commit. But more importantly, you also need a transaction coordinator/monitor which manages transaction propagation between the different database systems. This is part of JavaEE spec, and a pretty rarefied part of it at that. The TX coordinator itself is a complex piece of software. Your application software (via Spring, if you so wish) talks to the coordinator.
If, however, you just mean two databases within the same DB server, then vanilla JDBC transactions should work just fine, just perform your operations against both databases within a single transaction.