I have an OS X app that\'s distributed through the Mac App Store, and recently updated to Xcode 4.6.3.
When I run my regular build now, I receive:
Co
As highlighted in other answers, there is a change to the way code signing works. If you've installed any of the Xcode 5 DP's then the new tools will be being used even if you are using Xcode 4.6.X.
All you need to do at this stage (in Xcode 4.6.X) is take the --deep flag suggested above and add it into your code signing flags (Target, Build Settings) see image below.