Update for remote repository:
git filter-branch -f --index-filter "git rm -rf --cached --ignore-unmatch FOLDERNAME" -- --all
replace FOLDERNAME with the file or folder you wish to remove from the given git repository.
rm -rf .git/refs/original/
git reflog expire --expire=now --all
git gc --prune=now
git gc --aggressive --prune=now
Now push all the changes to the remote repository
git push --all --force
This would clean up the remote repository.