I had this question on an Algorithms test yesterday, and I can\'t figure out the answer. It is driving me absolutely crazy, because it was worth about 40 points. I figure
I suspect that a simple approach that looks like O(n^2) will actually yield something better, like O(n ln(n)). The sequences that take the longest to test (for any given n) are the ones that contain no trios, and that puts severe restrictions on the number of 1's that can be in the sequence.
I've come up with some hand-waving arguments, but I haven't been able to find a tidy proof. I'm going to take a stab in the dark: the answer is a very clever idea that the professor has known for so long that it's come to seem obvious, but it's much too hard for the students. (Either that or you slept through the lecture that covered it.)