Using Xcode 9.
In my case I always trying to avoid revoke Apple cert, because I share it with different developers from my company.
So I follow this answer which suggest to downgrade Xcode -> I check version 9.0.1 and unfortunately I have still same error message.
But I've installed additionally 8.3.3 - it works correctly with uploading to Apple store.
Update: I move back into Xcode 9.1installed directly from App Store, because I have problem with run ionic cordova build
So at this moment I am using two Xcode versions:
9.1 - for testing and creating builds - directly in Application 8.3.3 - for uploading build to iTunnes Connect - beside run from different folder I hope this is temporary situation.
[Update]
After some time I realized that my Provisioning Profile start with XC which is not accepted by Xcode 9+. After refresh all my Provisioning Profiles (avoiding XC in name) - I can finally use Xcode 9+.
Maybe this can be also useful for those who straggle this problem.