ggplot2 error : Discrete value supplied to continuous scale

问题:

I have a dataset called "merged", which contains 3 numeric columns "pauseMedian" and "numTotalPauses" and "diff". I also have a splineHull dataset, which also contains numeric columns "pauseMedian" and "numTotalPauses", plus a 6-level factor "microstyle"

I have the following code, which works perfectly. It plots a scatter plop and then overlay it with splineHull polygons colored according to "microstyle".

script 1:

ggplot(data=merged,aes(x = pauseMedian, y = numTotalPauses))         + geom_point()          + geom_polygon(data = splineHull,                        mapping=aes(x=pauseMedian,                                    y=numTotalPauses,                                    group=microstyle,                                    color = microstyle),                        alpha=0) 

Then, I also want to change the color of the points in the scatter plot by adding just one attribute color = diff.

script 2:

ggplot(data=merged,aes(x = pauseMedian, y = numTotalPauses, color = diff))         + geom_point()          + geom_polygon(data = splineHull,                        mapping=aes(x=pauseMedian,                                    y=numTotalPauses,                                    group=microstyle,                                    color = microstyle),                        alpha=0) 

I see the following error:

Error: Discrete value supplied to continuous scale 

I don't know why I see this error. If I still want colored scatter plot but no polygons, I run the following code it works again.

script 3:

ggplot(data=merged,aes(x = pauseMedian, y = numTotalPauses, color = diff))         + geom_point()   

So, what happened with script 2, where is the error from, and how can I make it work?

回答1:

Evidently, you can't have different color aesthetics for two different geoms. As a workaround, use a fill aesthetic for the points instead. This means you have to use a point marker style that has a filled interior (see ?pch and scroll down for the available point styles). Here's a way to do that:

ggplot() +    geom_point(data=merged,aes(x = pauseMedian, y = numTotalPauses, fill = diff),              pch=21, size=5, colour=NA) +   geom_polygon(data = splineHull,                 mapping=aes(x=pauseMedian,                             y=numTotalPauses,                             colour = microstyle),                alpha=0)  

Adding colour=NA (outside of aes()), gets rid of the default black border around the point markers. If you want a colored border around the points, just change colour=NA to whatever colour you prefer.

Also see this thread from the ggplot2 Google group, discussing a similar problem and some workarounds.

回答2:

Now that we know the two color vars are of different types, there's the issue. You can try using a different scale for one (e.g. fill instead of color)

set.seed(123) my_df1 <- data.frame(a=rnorm(100), b=runif(100), c=rep(1:10, 10)) my_df2 <- data.frame(a=rnorm(100), b=runif(100), c=factor(rep(LETTERS[1:5], 20)))  # this won't work. can't assign discrete and continuous to same scale ggplot() +   geom_point(data=my_df1, aes(x=a, y=b, color=c)) +   geom_polygon(data=my_df2, aes(x=a, y=b, color=c), alpha=0.5) 

Error: Discrete value supplied to continuous scale

# but use fill for polygons, and that works: ggplot() +   geom_point(data=my_df1, aes(x=a, y=b, color=c)) +   geom_polygon(data=my_df2, aes(x=a, y=b, fill=c), alpha=0.5) 

If you have to use the same scale (color), and can't convert the variables to the same type, see this for more info: Plotting continuous and discrete series in ggplot with facet

回答3:

Just to add something to the preferred eipi10 answer above (thank you for that!!). The colour="NA" option in order to get rid of the border around the circle shape (pch=21) has to be between "". If you use colour=NA (without the quotation marks) the whole shape disappears and is not plotted. I would have just commented on the answer but I still don't have reputation for that :)

文章来源: ggplot2 error : Discrete value supplied to continuous scale