R package dependencies

一曲冷凌霜 提交于 2019-12-05 00:42:00
Dirk Eddelbuettel

R thinks that you do not have the packages on your system.

Now you of course know that you do. What is the difference?

Well you probably have them installed in another directory which R CMD check does not look at. One way to fix this is described in Section 7 entitled "Tools" of the 'R Internals' manual (referenced from 'Writing R Extensions') and uses the file ~/.R/checkEnviron to set environment variables to be used during R CMD check.

For example, I have

# edd Apr 2003  Allow local install in /usr/local, also add a directory for
#               Debian packaged CRAN packages, and finally the default dir 
# edd Jul 2007  Now use R_LIBS_SITE, not R_LIBS
R_LIBS_SITE=${R_LIBS_SITE-'/usr/local/lib/R/site-library:'
                          '/usr/lib/R/site-library:/usr/lib/R/library'}

where I just broke the one long line (there aren't two apostrophes in the middle).

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