pandoc

Doesn't fit on the slide by default, doesn't even print by any other means. Here's the .Rmd: Edit: it seems you have to use plot() in every chunk. Second plot now prints. # Plot should show at high resolution ```{r echo=FALSE, comment = ""} # load some data require(plyr) rbi <- ddply(baseball, .(year), summarise, mean_rbi = mean(rbi, na.rm = TRUE)) ``` ```{r} # plot plot(mean_rbi ~ year, type = "l", data = rbi) ``` # Second attempt ```{r, fig.width = 2, fig.height = 2} plot(mean_rbi ~ year, type = "l", data = rbi) ``` # Third attempt ```{r, out.width = 2, out.height = 2} plot(mean_rbi ~ year,

I asked a related question: check if a program is installed But am refraining from answering until I've tested the solutions for myself on all three systems. I can get pandoc to work from within R on a windows machine but on linux I get this error/response for each method from the R terminal: 1: > system('pandoc -v') sh: 1: pandoc: not found 2: > myPaths <- c("pandoc", + "~/.cabal/bin/pandoc", + "~/Library/Haskell/bin/pandoc", + "C:\\PROGRA~1\\Pandoc\\bin\\pandoc") > Sys.which(myPaths) pandoc ~/.cabal/bin/pandoc "" "/home/tyler/.cabal/bin/pandoc" ~/Library/Haskell/bin/pandoc C:\\PROGRA~1\

I'm writing a function that uses pandoc in R through the command line. How can I use R to check if pandoc installed (I also assume it would have to be on the path which may be an issue for windows users)? This suggestion is based entirely on my personal experience with this question that RStudio can't seem to read what's in my .bashrc file on my Ubuntu system. I have installed Pandoc using the cabal install pandoc method described here since there were features I needed from more recent versions of Pandoc than were available with Ubuntu's package manager. Running R from the terminal could

When I used titlesec in my markdown document as below: --- header-includes: - \usepackage{titlesec} --- when processing it by pandoc, I got the following error: pandoc try.md -o try.pdf ! Argument of \paragraph has an extra }. <inserted text> \par l.1290 \ttl@extract\paragraph pandoc: Error producing PDF by searching, I found the following work-around for R-markdown: Can't knit to pdf with custom styles I wonder how can I implement a similar work-around with markdown and YAML headers? I also found and verified the following approach would work: pandoc --variable=subparagraph try.md -o try.pdf

RStudio : 0.98.994 OS: Microsoft Windows 7 Ultimate Edition, 64-bit Service Pack 1 MiKTeX: 2.9.4503 Hi, I get the following error when I try to knit a PDF document. pandoc.exe: Error producing PDF from TeX source. This is pdfTeX, Version 3.1415926-1.40.11 (MiKTeX 2.9) pdflatex: The memory dump file could not be found. pdflatex: Data: pdflatex.fmt I also tried devtools::install_github('rstudio/rmarkdown') but was still getting an error when I added 'fig.align='center' to a ggplot2 plot in my document. It would work as HTML, but not as PDF. After seeing isomorphismes 's post I clicked on the

I want to iterate over a list of result-sets in my R markdown file. When I produce the output I want to include some text like headers with the name of the result set. One hacky solution I have found is to hardcode the html output directly in the documentation like this ## All results ```{r loopResults, echo=FALSE, results='asis'} results = list(result1 = data.frame(x=rnorm(3), y=rnorm(3)), result2=data.frame(x=rnorm(3), y=rnorm(3))) for(res in names(results)) { cat(paste("<h3>Results for: ", res, "</h3>>")) plot(results[[res]]$x, results[[res]]$y) } This doesn't seem to be the right way to do

I have two Docker images, one containing pandoc (an utility to convert documents in different formats to many formats), and an other containing pdflatex (from texlive , to convert tex files into pdf ). My goal here is to convert documents from md to pdf . I can run each image separately : # call pandoc inside my-pandoc-image (md -> tex) docker run --rm \ -v $(pwd):/pandoc \ my-pandoc-image \ pandoc -s test.md -o test.tex # call pdflatex inside my-texlive-image (tex -> pdf) docker run --rm \ -v $(pwd):/texlive \ my-texlive-image \ pdflatex test.tex # generates test.pdf But, in fact, what I want