overlap

I would like to infer shared genomic interval between different samples. My input: sample chr start end NE001 1 100 200 NE001 2 100 200 NE002 1 50 150 NE002 2 50 150 NE003 2 250 300 My expected output: chr start end freq 1 100 150 2 2 100 150 2 Where the "freq" is the how many samples have contribuited to infer the shared region. In the above example freq = 2 (NE001 and NE002). Cheers! If your data is in a data.frame (see below), using the Bioconductor GenomicRanges package I create a GRanges instance, keeping the non-range columns too library(GenomicRanges) gr <- makeGRangesFromDataFrame(df,

I have a certain event in the calendar assigned to a storeID that has a sdate (ShowDate) and an hdate (HideDate). Now for every new event with this storeID, I need to make sure that there's no overlap with an existing date period. Does that make sense? How do I do that? I read about stuff but couldn't figure out how to "insert only if not overlap". Jonathan Leffler In general, if you have two ranges with S1..E1 and S2..E2 as the start and end values of the ranges, then you have an overlap if: S1 < E2 and S2 < E1 This is symmetric, which is good (and reassuring). You will need to decide

I am trying to make widgets overlap partly in a Qt layout. My current layout is the following, achieved with a QVBoxLayout containing four QHBoxLayout children: I'm trying to regroup cards of the same suit, in order to achieve something like this (note that there is horizontal and vertical overlapping): Unfortunately, all the Qt documentation and all the Stack Overflow posts I have read try to avoid widgets overlapping rather than to seek it. Maybe there's a way to set negative spacing between widgets, or forcing a layout to have a maximum width calculated (e.g. according to the number of

What is the difference between these two queries : select a.gid, sum(length(b.the_geom)) from polygons as a , roads as b where st_intersects(a.the_geom,b.the_geom) group by a.gid ; select a.gid, sum(length(b.the_geom)) from polygons as a , roads as b where st_overlaps(a.the_geom,b.the_geom) group by a.gid ; Where the first query is giving the correct output whereas the second query retrieves no rows at all. The road that intersects the polygons also overlaps it, right? From the documentation of PostGIS http://postgis.net/docs/ST_Intersects.html If a geometry or geography shares any portion of

few days ago i ask 1 question in primefaces forum but nobody reply me. I facing a problem while using in fullpage layout(position="west"), the submenu can't fully display out. Can make it display overlap to the (position="center") as I don't wish to increase the width of the west layout? below link atatch with a picture as reference. http://www.imagebucket.net/bucket/is.php?i=10434&img=image.jpg this is part of the code: <p:layoutUnit position="west" size="200" > <ui:insert name="sideBar"> <h:form> <p:menu type="tiered" > <p:submenu label="Sales" > <p:menuitem disabled="#{user.customer}" value

In an interview, I was asked to write an implementation of strcpy and then fix it so that it properly handles overlapping strings. My implementation is below and it is very naive. How do I fix it so that: It detects overlapping strings and after detecting, how do we deal with the overlap and proceed? char* my_strcpy(char *a, char *b) { if (a == NULL || b == NULL) { return NULL; } if (a > b) { //we have an overlap? return NULL; } char *n = a; while (*b != '\0') { *a = *b; a++; b++; } *a = '\0'; return n; } int main(int argc, char *argv[]) { char str1[] = "wazzupdude"; char *after_cpy = my

I want to have two overlapping objects in a scene but I want to define which object should be drawn first. I have a sample of the code here: http://jsfiddle.net/sg02e5sm/1/ I'm using renderOrder = 1 for the second object to make it appear always on top of the first object (as long as they have the same Z value), but it's not working. WestLangley renderOrder does not make something appear "on top". It controls the order in which objects are rendered. If you want your 2nd plane to be "on top", you can add mesh.material.depthTest = false; for the 2nd plane, for example. fiddle: http://jsfiddle

I am trying to plot combined graphs for logistic regressions as the function logi.hist.plot but I would like to do it using ggplot2 (aesthetic reasons). The problem is that only one of the histograms should have the scale_y_reverse(). Is there any way to specify this in a single plot (see code below) or to overlap the two histograms by using coordinates that can be passed to the previous plot? ggplot(dat) + geom_point(aes(x=ind, y=dep)) + stat_smooth(aes(x=ind, y=dep), method=glm, method.args=list(family="binomial"), se=FALSE) + geom_histogram(data=dat[dat$dep==0,], aes(x=ind)) + geom