joblib

How to achieve GPU parallelism using tensor-flow?

跟風遠走 提交于 2019-12-02 18:36:09
问题 I am writing a gpu based string matching program using tensorflow edit distance features. By knowing the matching portion, I will extract the details and then store it to a datatable which eventually will be saved as a csv file. Here are the details: I have 2 lists. The smaller list is called test_string which contains about 9 words . The larger one is called the ref_string which is basically splitting of a large text file to one word per line. The file was originally a key-value pair . So

Python3 Joblib-Starts using multiple cores, drops to single core

我的梦境 提交于 2019-12-02 10:25:18
问题 I will preface this by saying I'm new to parallel processing. Working on getting better, but I can't find an answer to my problem, which seems to be fairly unique. I am having trouble with this piece of code: from joblib import Parallel import multiprocessing n_cores = multiprocessing.cpu_count() Parallel(n_jobs=n_cores)(delayed(blexon)(gene,genomes) for gene in genes) 'genes' and 'genomes' are lists of strings. In my genes list, I can have hundreds of genes. I'm using Parallel to run this

How to share a variable in 'joblib' Python library

百般思念 提交于 2019-12-01 08:43:14
from joblib import Parallel, delayed def func(v): temp.append(v) return temp = [] Parallel(n_jobs=4)(delayed(func)(v) for v in range(10)) print temp I want to make shared memory variable. But the value of temp is empty []. How can I do it? For other method, I tried pickle.dump and load. But there is a lock problem. Please give me advice! from joblib import Parallel, delayed def func(v): return v temp = Parallel(n_jobs=4)(delayed(func)(v) for v in range(10)) print temp delayed collects the output returned by func in a list and returns it on completion. 来源: https://stackoverflow.com/questions

How to share a variable in 'joblib' Python library

我们两清 提交于 2019-12-01 07:24:41
问题 from joblib import Parallel, delayed def func(v): temp.append(v) return temp = [] Parallel(n_jobs=4)(delayed(func)(v) for v in range(10)) print temp I want to make shared memory variable. But the value of temp is empty []. How can I do it? For other method, I tried pickle.dump and load. But there is a lock problem. Please give me advice! 回答1: from joblib import Parallel, delayed def func(v): return v temp = Parallel(n_jobs=4)(delayed(func)(v) for v in range(10)) print temp delayed collects

Why is it important to protect the main loop when using joblib.Parallel?

非 Y 不嫁゛ 提交于 2019-11-30 08:55:46
问题 The joblib docs contain the following warning: Under Windows, it is important to protect the main loop of code to avoid recursive spawning of subprocesses when using joblib.Parallel. In other words, you should be writing code like this: import .... def function1(...): ... def function2(...): ... ... if __name__ == '__main__': # do stuff with imports and functions defined about ... No code should run outside of the “if __name__ == ‘__main__’” blocks, only imports and definitions. Initially, I

Why is it important to protect the main loop when using joblib.Parallel?

不羁的心 提交于 2019-11-29 09:10:15
The joblib docs contain the following warning: Under Windows, it is important to protect the main loop of code to avoid recursive spawning of subprocesses when using joblib.Parallel. In other words, you should be writing code like this: import .... def function1(...): ... def function2(...): ... ... if __name__ == '__main__': # do stuff with imports and functions defined about ... No code should run outside of the “if __name__ == ‘__main__’” blocks, only imports and definitions. Initially, I assumed this was just to prevent against the occasional odd case where a function passed to joblib

Training sklearn models in parallel with joblib blocks the process

偶尔善良 提交于 2019-11-29 05:16:42
As suggested in this answer , I tried to use joblib to train multiple scikit-learn models in parallel. import joblib import numpy from sklearn import tree, linear_model classifierParams = { "Decision Tree": (tree.DecisionTreeClassifier, {}),'' "Logistic Regression" : (linear_model.LogisticRegression, {}) } XTrain = numpy.array([[1,2,3],[4,5,6]]) yTrain = numpy.array([0, 1]) def trainModel(name, clazz, params, XTrain, yTrain): print("training ", name) model = clazz(**params) model.fit(XTrain, yTrain) return model joblib.Parallel(n_jobs=4)(joblib.delayed(trainModel)(name, clazz, params, XTrain,

Multiprocessing backed parallel loops cannot be nested below threads

大城市里の小女人 提交于 2019-11-28 11:06:15
What is the reason of such issue in joblib? 'Multiprocessing backed parallel loops cannot be nested below threads, setting n_jobs=1' What should I do to avoid such issue? Actually I need to implement XMLRPC server which run heavy computation in background thread and report current progress through polling from UI client. It uses scikit-learn which are based on joblib. P.S.: I've simply changed name of the thread to "MainThread" to avoid such warning and everything looks working good (run in parallel as expected without issues). What might be a problem in future for such workaround? This seems

How do I store a TfidfVectorizer for future use in scikit-learn?

。_饼干妹妹 提交于 2019-11-28 06:57:36
I have a TfidfVectorizer that vectorizes collection of articles followed by feature selection. vectroizer = TfidfVectorizer() X_train = vectroizer.fit_transform(corpus) selector = SelectKBest(chi2, k = 5000 ) X_train_sel = selector.fit_transform(X_train, y_train) Now, I want to store this and use it in other programs. I don't want to re-run the TfidfVectorizer() and the feature selector on the training dataset. How do I do that? I know how to make a model persistent using joblib but I wonder if this is the same as making a model persistent. You can simply use the built in pickle lib: pickle

How do I store a TfidfVectorizer for future use in scikit-learn?

大憨熊 提交于 2019-11-27 05:38:20
问题 I have a TfidfVectorizer that vectorizes collection of articles followed by feature selection. vectroizer = TfidfVectorizer() X_train = vectroizer.fit_transform(corpus) selector = SelectKBest(chi2, k = 5000 ) X_train_sel = selector.fit_transform(X_train, y_train) Now, I want to store this and use it in other programs. I don't want to re-run the TfidfVectorizer() and the feature selector on the training dataset. How do I do that? I know how to make a model persistent using joblib but I wonder