dbscan

Best programming language to implement DBSCAN algorithm querying a MongoDB database?

ぃ、小莉子 提交于 2019-12-05 10:59:36
问题 I've to implement the DBSCAN algorithm. Assuming to start from this pseudocode DBSCAN(D, eps, MinPts) C = 0 for each unvisited point P in dataset D mark P as visited NeighborPts = regionQuery(P, eps) if sizeof(NeighborPts) < MinPts mark P as NOISE else C = next cluster expandCluster(P, NeighborPts, C, eps, MinPts) expandCluster(P, NeighborPts, C, eps, MinPts) add P to cluster C for each point P' in NeighborPts if P' is not visited mark P' as visited NeighborPts' = regionQuery(P', eps) if

dbscan密度聚类算法

核能气质少年 提交于 2019-12-04 10:36:26
场景 基于弱覆盖栅格(经纬度)数据集,通过聚类算法实现基站规划 概念 DBSCAN(Density-Based Spatial Clustering of Applications with Noise)是一个比较有代表性的基于密度的聚类算法。与划分和层次聚类方法不同,它将簇定义为密度相连的点的最大集合,能够把具有足够高密度的区域划分为簇,并可在噪声的空间数据库中发现任意形状的聚类。 DBSCAN中的几个定义: Ε邻域:   给定对象半径为Ε内的区域称为该对象的Ε邻域; 核心对象:   如果给定对象Ε邻域内的样本点数大于等于MinPts,则称该对象为核心对象; 直接密度可达:   对于样本集合D,如果样本点q在p的Ε邻域内,并且p为核心对象,那么对象q从对象p直接密度可达。 密度可达:   对于样本集合D,给定一串样本点p1,p2….pn,p= p1,q= pn,假如对象pi从pi-1直接密度可达,那么对象q从对象p密度可达。 密度相连:   存在样本集合D中的一点o,如果对象o到对象p和对象q都是密度可达的,那么p和q密度相联。 可以发现,密度可达是直接密度可达的传递闭包,并且这种关系是非对称的。密度相连是对称关系。DBSCAN目的是找到密度相连对象的最大集合。 Eg: 假设半径Ε=3,MinPts=3,点p的E邻域中有点{m,p,p1,p2,o}, 点m的E邻域中有点{m,q

DBSCAN code in C# or vb.net , for Cluster Analysis

半世苍凉 提交于 2019-12-04 09:41:34
问题 Kindly I need your support to advice a library or a code in vb.net or C#.net that applies the DBSCAN to make Denisty Based Cluster of data . I have a GPS data , and I want to find stay points using the DBSCAN algorithm . But , I do not understand much of the technical part of the algorithm. 回答1: Not sure that's what you're looking for because the algorithm is very well explain on wikipedia. Do you want an explaination of the algorithm or a translation(or good library) of it in C# ? You can

Clustering using a custom distance metric for lat/long pairs

二次信任 提交于 2019-12-04 03:43:30
I'm trying to specify a custom clustering function for the scikit-learn DBSCAN implementation: def geodistance(latLngA, latLngB): print latLngA, latLngB return vincenty(latLngA, latLngB).miles cluster_labels = DBSCAN( eps=500, min_samples=max(2, len(found_geopoints)/10), metric=geodistance ).fit(np.array(found_geopoints)).labels_ However, when I print out the arguments to my distance function they aren't at all what I would expect: [ 0.53084126 0.19584111 0.99640966 0.88013373 0.33753788 0.79983037 0.71716144 0.85832664 0.63559538 0.23032912] [ 0.53084126 0.19584111 0.99640966 0.88013373 0

Python Clustering Algorithms

Deadly 提交于 2019-12-03 16:26:53
问题 I've been looking around scipy and sklearn for clustering algorithms for a particular problem I have. I need some way of characterizing a population of N particles into k groups, where k is not necessarily know, and in addition to this, no a priori linking lengths are known (similar to this question). I've tried kmeans, which works well if you know how many clusters you want. I've tried dbscan, which does poorly unless you tell it a characteristic length scale on which to stop looking (or

DBSCAN on spark : which implementation

老子叫甜甜 提交于 2019-12-03 07:45:42
问题 I would like to do some DBSCAN on Spark. I have currently found 2 implementations: https://github.com/irvingc/dbscan-on-spark https://github.com/alitouka/spark_dbscan I have tested the first one with the sbt configuration given in its github but: functions in the jar are not the same as those in the doc or in the source on github. For example, I cannot find the train function in the jar I manage to run a test with the fit function (found in the jar) but a bad configuration of epsilon (a

Python Clustering Algorithms

时光毁灭记忆、已成空白 提交于 2019-12-03 05:42:18
I've been looking around scipy and sklearn for clustering algorithms for a particular problem I have. I need some way of characterizing a population of N particles into k groups, where k is not necessarily know, and in addition to this, no a priori linking lengths are known (similar to this question ). I've tried kmeans, which works well if you know how many clusters you want. I've tried dbscan, which does poorly unless you tell it a characteristic length scale on which to stop looking (or start looking) for clusters. The problem is, I have potentially thousands of these clusters of particles,

DBSCAN code in C# or vb.net , for Cluster Analysis

余生颓废 提交于 2019-12-03 04:42:32
Kindly I need your support to advice a library or a code in vb.net or C#.net that applies the DBSCAN to make Denisty Based Cluster of data . I have a GPS data , and I want to find stay points using the DBSCAN algorithm . But , I do not understand much of the technical part of the algorithm. Not sure that's what you're looking for because the algorithm is very well explain on wikipedia . Do you want an explaination of the algorithm or a translation(or good library) of it in C# ? You can have a look at general clustering algorithm too. Algorithm Let say you chose epsilon and the number of

Choosing eps and minpts for DBSCAN (R)?

匿名 (未验证) 提交于 2019-12-03 02:47:02
可以将文章内容翻译成中文,广告屏蔽插件可能会导致该功能失效(如失效,请关闭广告屏蔽插件后再试): 由 翻译 强力驱动 问题: I've been searching for an answer for this question for quite a while, so I'm hoping someone can help me. I'm using dbscan from the fpc library in R. For example, I am looking at the USArrests data set and am using dbscan on it as follows: library ( fpc ) ds <- dbscan ( USArrests , eps = 20 ) Choosing eps was merely by trial and error in this case. However I am wondering if there is a function or code available to automate the choice of the best eps/minpts. I know some books recommend producing a plot of the kth sorted distance to

scikit-learn DBSCAN memory usage

匿名 (未验证) 提交于 2019-12-03 02:31:01
可以将文章内容翻译成中文,广告屏蔽插件可能会导致该功能失效(如失效,请关闭广告屏蔽插件后再试): 由 翻译 强力驱动 问题: UPDATED: In the end, the solution I opted to use for clustering my large dataset was one suggested by Anony-Mousse below. That is, using ELKI's DBSCAN implimentation to do my clustering rather than scikit-learn's. It can be run from the command line and with proper indexing, performs this task within a few hours. Use the GUI and small sample datasets to work out the options you want to use and then go to town. Worth looking into. Anywho, read on for a description of my original problem and some interesting discussion. I have a