correlation

How to plot correlation heatmap when using pyspark+databricks

寵の児 提交于 2020-07-06 20:22:10
问题 I am studying pyspark in databricks. I want to generate a correlation heatmap. Let's say this is my data: myGraph=spark.createDataFrame([(1.3,2.1,3.0), (2.5,4.6,3.1), (6.5,7.2,10.0)], ['col1','col2','col3']) And this is my code: import pyspark from pyspark.sql import SparkSession import matplotlib.pyplot as plt import pandas as pd import numpy as np from ggplot import * from pyspark.ml.feature import VectorAssembler from pyspark.ml.stat import Correlation from pyspark.mllib.stat import

Some of my columns get missing when I use df.corr in Pandas

心已入冬 提交于 2020-07-06 12:49:29
问题 Here is my code: import numpy as np import pandas as pd import seaborn as sns import matplotlib.pyplot as plt data = pd.read_csv('death_regression2.csv') data3 = data.replace(r'\s+', np.nan, regex = True) plt.figure(figsize=(90,90)) corr = data3.corr() print(np.shape(list(corr))) print(np.shape(data3)) (135,) (4909, 204) So before I use the correlation function, the total number of parameters was 204(number of the columns) but after using data3.corr(), some parameters go missing, reduced to

Plot the equivalent of correlation matrix for factors (categorical data)? And mixed types?

痴心易碎 提交于 2020-07-05 06:55:11
问题 Actually there are 2 questions, one is more advanced than the other. Q1: I am looking for a method that similar to corrplot() but can deal with factors. I originally tried to use chisq.test() then calculate the p-value and Cramer's V as correlation, but there too many columns to figure out. So could anyone tell me if there is a quick way to create a "corrplot" that each cell contains the value of Cramer's V , while the colour is rendered by p-value . Or any other kind of similar plot.

Plot the equivalent of correlation matrix for factors (categorical data)? And mixed types?

一笑奈何 提交于 2020-07-05 06:55:08
问题 Actually there are 2 questions, one is more advanced than the other. Q1: I am looking for a method that similar to corrplot() but can deal with factors. I originally tried to use chisq.test() then calculate the p-value and Cramer's V as correlation, but there too many columns to figure out. So could anyone tell me if there is a quick way to create a "corrplot" that each cell contains the value of Cramer's V , while the colour is rendered by p-value . Or any other kind of similar plot.

How to add the spearman correlation p value along with correlation coefficient to ggpairs?

旧巷老猫 提交于 2020-06-28 06:51:50
问题 Constructing a ggpairs figure in R using the following code. df is a dataframe containing 6 continuous variables and one Group variable ggpairs(df[,-1],columns = 1:ncol(df[,-1]), mapping=ggplot2::aes(colour = df$Group),legends = T,axisLabels = "show", upper = list(continuous = wrap("cor", method = "spearman", size = 2.5, hjust=0.7)))+ theme(panel.grid.major = element_blank(), panel.grid.minor = element_blank(), axis.line = element_line(colour = "black")) I am trying to add the p-value of

How to add the spearman correlation p value along with correlation coefficient to ggpairs?

 ̄綄美尐妖づ 提交于 2020-06-28 06:51:44
问题 Constructing a ggpairs figure in R using the following code. df is a dataframe containing 6 continuous variables and one Group variable ggpairs(df[,-1],columns = 1:ncol(df[,-1]), mapping=ggplot2::aes(colour = df$Group),legends = T,axisLabels = "show", upper = list(continuous = wrap("cor", method = "spearman", size = 2.5, hjust=0.7)))+ theme(panel.grid.major = element_blank(), panel.grid.minor = element_blank(), axis.line = element_line(colour = "black")) I am trying to add the p-value of

Spearman rank correlation with missing values?

偶尔善良 提交于 2020-06-15 19:38:26
问题 I have two list of words which are ordered by the number of occurrences The ordering was generated by counting each word in two files sampled at different point in times. I would like to calculate spearman to see how well the order of the first file was found in the second file. for instance: File a: 1) is 2) went 3) work File b: 1) is 2) work 3) went Because the ordering is different I would not achieve a score of 1.0 but yet one that would suggest that these two samples are rather similar

Program to obtain frequency matrix of categorical data

纵饮孤独 提交于 2020-06-15 10:11:03
问题 I am working on data that contains more than 300 categorical features that I have factored into 0s and 1s. Now, i need to create a matrix of the features to with frequency of joint occurrence in each cell. In the end , I am looking to create a heatmap of this frequency matrix. So, my dataframe in R looks like this: id cat1 cat2 cat3 cat4 156 0 0 1 1 465 1 1 1 0 573 0 1 1 0 The output I want is: cat1 cat2 cat3 ... cat1 0 1 0 cat2 1 0 2 cat3 1 2 0 . . where each cell value denotes the number of

How to calculate Rolling Correlation with pandas?

那年仲夏 提交于 2020-05-25 06:48:48
问题 I understand how to calculate a rolling sum, std or average. Example: df['MA10'] = df['Asset1'].rolling(10).mean() But I don't understand the syntax to calculate the rolling correlation between two dataframes columns: df['Asset1'] and df['Asset2'] The documentation doesn't provide any example regarding the correlation. https://pandas.pydata.org/pandas-docs/stable/generated/pandas.DataFrame.rolling.html Any insights? Thanks! 回答1: It's in there, even if hidden a bit: df['Asset1'].rolling(10)

Create clusters using correlation matrix in Python

蓝咒 提交于 2020-05-14 20:30:31
问题 all, I have a correlation matrix of 21 industry sectors. Now I want to split these 21 sectors into 4 or 5 groups, with sectors of similar behaviors grouped together. Can experts shed me some lights on how to do this in Python please? Thanks much in advance! 回答1: You might explore the use of Pandas DataFrame.corr and the scipy.cluster Hierarchical Clustering package import pandas as pd import scipy.cluster.hierarchy as spc df = pd.DataFrame(my_data) corr = df.corr().values pdist = spc.distance