blas

Unable to import numpy: Error: /usr/lib/liblapack.so.3: undefined symbol: gotoblas

自古美人都是妖i 提交于 2019-12-01 14:32:56
问题 When I try to import numpy, I get the following error: /usr/local/lib/python2.7/dist-packages/numpy/linalg/__init__.py in <module>() 49 from .info import __doc__ 50 ---> 51 from .linalg import * 52 53 from numpy.testing import Tester /usr/local/lib/python2.7/dist-packages/numpy/linalg/linalg.py in <module>() 27 ) 28 from numpy.lib import triu, asfarray ---> 29 from numpy.linalg import lapack_lite, _umath_linalg 30 from numpy.matrixlib.defmatrix import matrix_power 31 from numpy.compat import

Using the Scipy cython_blas interface from Cython not working on vectors Mx1 1xN

此生再无相见时 提交于 2019-12-01 13:41:16
This has to deal with a similar problem here: Calling BLAS / LAPACK directly using the SciPy interface and Cython but is different because I'm using the actual code in the SciPy example here _test_dgemm : https://github.com/scipy/scipy/blob/master/scipy/linalg/cython_blas.pyx which is extremely fast (5x faster than numpy.dot when an output matrix is input or 20x faster if not). It produces no results if Mx1 1xN vectors are passed. It produces the same values as numpy.dot with matrices passed. I've minimized the code since no answers have been posted for clarity. Here's the dgemm.pyx. : import

Using Armadillo library; Linking Error with BLAS and LAPACK

风格不统一 提交于 2019-12-01 11:33:58
问题 I am trying to compile and run the sample in example2.cpp from Armadillo, using the pre-compiled blas and lapack dll files provided. This is what I didin Visual C++ 2013: 1) I set up a new and empty win32 console application project; 2) Add a new and empty cpp file called test.cpp. 3) I copyed the content of example2.cpp into this test.cpp file. 4) In the project properties->C/C++->Additional Include Directories, I added the path of the "include" folder from the Armadillo library. 5) In

Using the Scipy cython_blas interface from Cython not working on vectors Mx1 1xN

送分小仙女□ 提交于 2019-12-01 10:05:31
问题 This has to deal with a similar problem here: Calling BLAS / LAPACK directly using the SciPy interface and Cython but is different because I'm using the actual code in the SciPy example here _test_dgemm : https://github.com/scipy/scipy/blob/master/scipy/linalg/cython_blas.pyx which is extremely fast (5x faster than numpy.dot when an output matrix is input or 20x faster if not). It produces no results if Mx1 1xN vectors are passed. It produces the same values as numpy.dot with matrices passed.

numpy import fails in virtualenv when ulimit -v is set (OpenBLAS: Resource temporarily unavailable)

情到浓时终转凉″ 提交于 2019-12-01 09:15:25
When I set a ulimit -v on a powerful machine I'm working on (48 × Intel(R) Xeon(R) CPU E7-4860 v2 @ 2.60GHz, 2 TB RAM, Red Hat Enterprise Linux Server release 6.7), python fails to import numpy when I'm working in my virtualenv, as shown below. Everything seems fine when I impose no resource limitations or when I'm not working inside virtualenv. I suppose this is a bug somewhere. Did I set up something wrongly? Where is the correct place to report this? NumPy? OpenBLAS? System administrator? $ ulimit -a core file size (blocks, -c) 0 data seg size (kbytes, -d) unlimited scheduling priority (-e)

numpy import fails in virtualenv when ulimit -v is set (OpenBLAS: Resource temporarily unavailable)

半城伤御伤魂 提交于 2019-12-01 06:25:45
问题 When I set a ulimit -v on a powerful machine I'm working on (48 × Intel(R) Xeon(R) CPU E7-4860 v2 @ 2.60GHz, 2 TB RAM, Red Hat Enterprise Linux Server release 6.7), python fails to import numpy when I'm working in my virtualenv, as shown below. Everything seems fine when I impose no resource limitations or when I'm not working inside virtualenv. I suppose this is a bug somewhere. Did I set up something wrongly? Where is the correct place to report this? NumPy? OpenBLAS? System administrator?

armadillo linear system solver (with openblas)

强颜欢笑 提交于 2019-12-01 06:14:55
问题 I've been testing various open source codes for solving a linear system of equations in C++. So far the fastest I've found is armadillo, using the OPENblas package as well. To solve a dense linear NxN system, where N=5000 takes around 8.3 seconds on my system, which is really really fast (without openblas installed, it takes around 30 seconds). One reason for this increase is that armadillo+openblas seems to enable using multiple threads. It runs on two of my cores, whereas armadillo without

Why can R be linked to a shared BLAS later even if it was built with `--with-blas = lblas`?

本秂侑毒 提交于 2019-12-01 06:02:07
The BLAS section in R installation and administration manual says that when R is built from source , with configuration parameter --without-blas , it will build Netlib's reference BLAS into a standalone shared library at R_HOME/lib/libRblas.so , along side the standard R shared library R_HOME/lib/libR.so . This makes it easier for user to switch and benchmark different tuned BLAS in R environment. The guide suggests that researcher might use symbolic link to libRblas.so to achieve this, and this article gives more details on this. On contrary, when simply installing a pre-compiled binary

Matrix/Tensor Triple Product?

狂风中的少年 提交于 2019-11-30 18:46:02
An algorithm I'm working on requires computing, in a couple places, a type of matrix triple product. The operation takes three square matrices with identical dimensions, and produces a 3-index tensor. Labeling the operands A , B and C , the (i,j,k) -th element of the result is X[i,j,k] = \sum_a A[i,a] B[a,j] C[k,a] In numpy, you can compute this with einsum('ia,aj,ka->ijk', A, B, C) . Questions: Does this operation have a standard name? Can I compute this with a single BLAS call? Are there any other heavy-optimized numerical C/Fortran libraries that can compute expressions of this type?

Is it possible to switch between BLAS libraries without recompiling program?

本秂侑毒 提交于 2019-11-30 14:01:16
问题 For example can I have Atlas, OpenBlas, MKL installed on my Ubuntu 14.04 at the same time and switch between them without recompiling Caffe? 回答1: Sure, you have to have them installed, and on Ubuntu/Debian issue command update-alternatives --config libblas.so.3 You'll get numbered list of alternatives and could switch between them easily Link: https://wiki.debian.org/DebianScience/LinearAlgebraLibraries 回答2: Yes, you can. You just need to use dynamic library linking. The libblas.so.3 is a