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问题:
I am trying to compile a small package that I've made. This package uses Rcpp and RcppArmadillo. Everything was working well until I updated my mac to Sierra (version 10.12.5). I have now the following error message when building the package from Rstudio (version 1.0.143):
Error in Rcpp::compileAttributes() : Evaluation error: no native symbols were extracted. Calls: source ... withVisible -> eval -> eval -> <Anonymous> -> .Call Execution halted
Any idea what this is and how it can be fixed?
Thank you very much!
回答1:
I have the same error after renaming the package.
After removing the compiled object files under src/
such as xxx.o
and xxx.so
, it works again.
回答2:
Try
tools::package_native_routine_registration_skeleton(".", character_only = FALSE)
The unintuitive character_only = FALSE is necessary if you are not calling this for the first time.
I copied this answer from kbenoit at https://github.com/kbenoit/quanteda/issues/846. This worked for me when I had a similar problem.
回答3:
Try deleting RcppExports.cpp and RcppExports.o and then in build options go-to "more" -> "clean and rebuild" This usually does the trick when I have similar problems
回答4:
In my case this happens when there is a problem with the NAMESPACE file, or when NAMESPACE is missing. There is a catch-22. Roxygen2 wont overwrite your NAMESPACE file, but if you delete it and run roxygen to generate the NAMESPACE file, compileAttributes is called, but hangs because the NAMESPACE file is missing.
回答5:
I got mine fixed by recreating the project in RStudio from GitHub in a fresh directory.
I had the same problem; happened as I was working on a markdown file irrelevant to the package, but then all of sudden package would not build with the same error:
> devtools::session_info() Session info ---------------------------------------------------------------------------------------------------------------------- setting value version R version 3.5.0 (2018-04-23) system x86_64, mingw32 ui RStudio (1.1.453) language (EN) collate English_United States.1252 tz America/Los_Angeles date 2018-06-05 Packages -------------------------------------------------------------------------------------------------------------------------- package * version date source assertthat 0.2.0 2017-04-11 CRAN (R 3.5.0) base * 3.5.0 2018-04-23 local bindr 0.1.1 2018-03-13 CRAN (R 3.5.0) bindrcpp 0.2.2 2018-03-29 CRAN (R 3.5.0) colorspace 1.3-2 2016-12-14 CRAN (R 3.5.0) compiler 3.5.0 2018-04-23 local datasets * 3.5.0 2018-04-23 local devtools 1.13.5 2018-02-18 CRAN (R 3.5.0) digest 0.6.15 2018-01-28 CRAN (R 3.5.0) dplyr 0.7.5 2018-05-19 CRAN (R 3.5.0) epicR * 0.16.0 2018-06-06 local ggplot2 2.2.1.9000 2018-05-28 Github (tidyverse/ggplot2@4299917) ggthemes 3.5.0 2018-05-07 CRAN (R 3.5.0) glue 1.2.0 2017-10-29 CRAN (R 3.5.0) graphics * 3.5.0 2018-04-23 local grDevices * 3.5.0 2018-04-23 local grid 3.5.0 2018-04-23 local gtable 0.2.0 2016-02-26 CRAN (R 3.5.0) lazyeval 0.2.1 2017-10-29 CRAN (R 3.5.0) magrittr 1.5 2014-11-22 CRAN (R 3.5.0) memoise 1.1.0 2017-04-21 CRAN (R 3.5.0) methods * 3.5.0 2018-04-23 local munsell 0.4.3 2016-02-13 CRAN (R 3.5.0) pillar 1.2.3 2018-05-25 CRAN (R 3.5.0) pkgconfig 2.0.1 2017-03-21 CRAN (R 3.5.0) plyr 1.8.4 2016-06-08 CRAN (R 3.5.0) purrr 0.2.5 2018-05-29 CRAN (R 3.5.0) R6 2.2.2 2017-06-17 CRAN (R 3.5.0) Rcpp 0.12.17 2018-05-18 CRAN (R 3.5.0) rlang 0.2.1 2018-05-30 CRAN (R 3.5.0) scales 0.5.0 2017-08-24 CRAN (R 3.5.0) stats * 3.5.0 2018-04-23 local tibble 1.4.2 2018-01-22 CRAN (R 3.5.0) tidyselect 0.2.4 2018-02-26 CRAN (R 3.5.0) tools 3.5.0 2018-04-23 local utils * 3.5.0 2018-04-23 local withr 2.1.2 2018-03-15 CRAN (R 3.5.0) yaml 2.1.19 2018-05-01 CRAN (R 3.5.0)