Rcpp::compileAttributes() Error

匿名 (未验证) 提交于 2019-12-03 08:59:04

问题:

I am trying to compile a small package that I've made. This package uses Rcpp and RcppArmadillo. Everything was working well until I updated my mac to Sierra (version 10.12.5). I have now the following error message when building the package from Rstudio (version 1.0.143):

Error in Rcpp::compileAttributes() :  Evaluation error: no native symbols were extracted. Calls: source ... withVisible -> eval -> eval -> <Anonymous> -> .Call Execution halted 

Any idea what this is and how it can be fixed?

Thank you very much!

回答1:

I have the same error after renaming the package.

After removing the compiled object files under src/ such as xxx.o and xxx.so, it works again.



回答2:

Try

tools::package_native_routine_registration_skeleton(".", character_only = FALSE)

The unintuitive character_only = FALSE is necessary if you are not calling this for the first time.

I copied this answer from kbenoit at https://github.com/kbenoit/quanteda/issues/846. This worked for me when I had a similar problem.



回答3:

Try deleting RcppExports.cpp and RcppExports.o and then in build options go-to "more" -> "clean and rebuild" This usually does the trick when I have similar problems



回答4:

In my case this happens when there is a problem with the NAMESPACE file, or when NAMESPACE is missing. There is a catch-22. Roxygen2 wont overwrite your NAMESPACE file, but if you delete it and run roxygen to generate the NAMESPACE file, compileAttributes is called, but hangs because the NAMESPACE file is missing.



回答5:

I got mine fixed by recreating the project in RStudio from GitHub in a fresh directory.

I had the same problem; happened as I was working on a markdown file irrelevant to the package, but then all of sudden package would not build with the same error:

    > devtools::session_info() Session info ----------------------------------------------------------------------------------------------------------------------  setting  value                         version  R version 3.5.0 (2018-04-23)  system   x86_64, mingw32               ui       RStudio (1.1.453)             language (EN)                          collate  English_United States.1252    tz       America/Los_Angeles           date     2018-06-05                    Packages --------------------------------------------------------------------------------------------------------------------------  package    * version    date       source                              assertthat   0.2.0      2017-04-11 CRAN (R 3.5.0)                      base       * 3.5.0      2018-04-23 local                               bindr        0.1.1      2018-03-13 CRAN (R 3.5.0)                      bindrcpp     0.2.2      2018-03-29 CRAN (R 3.5.0)                      colorspace   1.3-2      2016-12-14 CRAN (R 3.5.0)                      compiler     3.5.0      2018-04-23 local                               datasets   * 3.5.0      2018-04-23 local                               devtools     1.13.5     2018-02-18 CRAN (R 3.5.0)                      digest       0.6.15     2018-01-28 CRAN (R 3.5.0)                      dplyr        0.7.5      2018-05-19 CRAN (R 3.5.0)                      epicR      * 0.16.0     2018-06-06 local                               ggplot2      2.2.1.9000 2018-05-28 Github (tidyverse/ggplot2@4299917)  ggthemes     3.5.0      2018-05-07 CRAN (R 3.5.0)                      glue         1.2.0      2017-10-29 CRAN (R 3.5.0)                      graphics   * 3.5.0      2018-04-23 local                               grDevices  * 3.5.0      2018-04-23 local                               grid         3.5.0      2018-04-23 local                               gtable       0.2.0      2016-02-26 CRAN (R 3.5.0)                      lazyeval     0.2.1      2017-10-29 CRAN (R 3.5.0)                      magrittr     1.5        2014-11-22 CRAN (R 3.5.0)                      memoise      1.1.0      2017-04-21 CRAN (R 3.5.0)                      methods    * 3.5.0      2018-04-23 local                               munsell      0.4.3      2016-02-13 CRAN (R 3.5.0)                      pillar       1.2.3      2018-05-25 CRAN (R 3.5.0)                      pkgconfig    2.0.1      2017-03-21 CRAN (R 3.5.0)                      plyr         1.8.4      2016-06-08 CRAN (R 3.5.0)                      purrr        0.2.5      2018-05-29 CRAN (R 3.5.0)                      R6           2.2.2      2017-06-17 CRAN (R 3.5.0)                      Rcpp         0.12.17    2018-05-18 CRAN (R 3.5.0)                      rlang        0.2.1      2018-05-30 CRAN (R 3.5.0)                      scales       0.5.0      2017-08-24 CRAN (R 3.5.0)                      stats      * 3.5.0      2018-04-23 local                               tibble       1.4.2      2018-01-22 CRAN (R 3.5.0)                      tidyselect   0.2.4      2018-02-26 CRAN (R 3.5.0)                      tools        3.5.0      2018-04-23 local                               utils      * 3.5.0      2018-04-23 local                               withr        2.1.2      2018-03-15 CRAN (R 3.5.0)                      yaml         2.1.19     2018-05-01 CRAN (R 3.5.0)  


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